Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_40962-4.5 | |
| Bpl_scaf_40962-5.1 | |
| Bpl_scaf_40962-5.3 | |
| Bpl_scaf_40962-6.0 | |
| Bpl_scaf_40962-6.2 | |
| Bpl_scaf_40962-7.11 | |
| Bpl_scaf_40962-7.16 | |
| Bpl_scaf_40962-7.19 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_40962-7.32 | NF-KAPPA-B INHIBITOR ALPHA |
| Bpl_scaf_40962-7.33 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_40968-0.18 | |
| Bpl_scaf_40968-0.20 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_40968-0.21 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_40968-0.22 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_40982-1.19 | CEREBELLIN-RELATED |
| Bpl_scaf_40982-1.20 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 |
| Bpl_scaf_40982-1.21 | SELECTIN LIGAND RELATED |
| Bpl_scaf_40982-1.22 | SELECTIN LIGAND RELATED |
| Bpl_scaf_40990-0.1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_40990-0.5 | |
| Bpl_scaf_40997-0.2 | |
| Bpl_scaf_40997-1.10 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_40997-1.11 | |
| Bpl_scaf_40997-1.8 | |
| Bpl_scaf_40997-1.9 | FATTY ACID BINDING PROTEIN |
| Bpl_scaf_41001-0.5 | |
| Bpl_scaf_41003-0.0 | |
| Bpl_scaf_41006-0.0 | SOLUTE CARRIER FAMILY 35 |
| Bpl_scaf_41006-1.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_41006-1.1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_41016-0.15 | |
| Bpl_scaf_41016-0.16 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_41016-1.0 | |
| Bpl_scaf_41016-1.15 | |
| Bpl_scaf_41016-1.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_41016-1.21 | |
| Bpl_scaf_41016-1.22 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Bpl_scaf_41016-1.3 | |
| Bpl_scaf_41025-0.0 | |
| Bpl_scaf_41025-0.2 | |
| Bpl_scaf_41025-1.32 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41025-1.33 | |
| Bpl_scaf_41025-1.35 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41025-1.48 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41025-1.49 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41025-1.50 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41025-1.52 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_41035-0.4 | |
| Bpl_scaf_41035-0.5 | |
| Bpl_scaf_41035-0.8 |
