Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_41094-8.7 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_41094-8.8 | |
| Bpl_scaf_41094-8.9 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_41094-9.0 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_41123-0.11 | TEMPTIN |
| Bpl_scaf_41123-0.9 | |
| Bpl_scaf_41123-1.10 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER |
| Bpl_scaf_41123-1.11 | SPHINGOMYELIN PHOSPHODIESTERASE |
| Bpl_scaf_41123-1.9 | PHOSPHOGLYCERATE MUTASE |
| Bpl_scaf_41123-3.6 | |
| Bpl_scaf_41123-4.4 | AGAP007712-PA |
| Bpl_scaf_41123-5.18 | |
| Bpl_scaf_41123-5.20 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_41123-5.22 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| Bpl_scaf_41123-5.23 | NEUROBLASTOMA-AMPLIFIED SEQUENCE |
| Bpl_scaf_41123-5.25 | NEUROBLASTOMA-AMPLIFIED SEQUENCE |
| Bpl_scaf_41124-0.2 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| Bpl_scaf_41124-0.3 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED |
| Bpl_scaf_41125-0.7 | |
| Bpl_scaf_41126-0.5 | NARDILYSIN |
| Bpl_scaf_41126-0.6 | TRANSCRIPTION ELONGATION REGULATOR 1 |
| Bpl_scaf_41128-0.5 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| Bpl_scaf_41128-1.13 | |
| Bpl_scaf_41128-1.9 | |
| Bpl_scaf_41128-10.11 | B9 DOMAIN-CONTAINING |
| Bpl_scaf_41128-10.7 | UBIQUITIN-PROTEIN LIGASE E3C |
| Bpl_scaf_41128-11.10 | POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_41128-11.15 | |
| Bpl_scaf_41128-11.19 | |
| Bpl_scaf_41128-12.11 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Bpl_scaf_41128-12.12 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_41128-12.13 | |
| Bpl_scaf_41128-12.14 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| Bpl_scaf_41128-2.11 | DYNACTIN P62 SUBUNIT |
| Bpl_scaf_41128-2.13 | TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER |
| Bpl_scaf_41128-2.19 | UNCHARACTERIZED |
| Bpl_scaf_41128-2.8 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_41128-3.7 | NF-KAPPA-B INHIBITOR ALPHA |
| Bpl_scaf_41128-3.8 | NUCLEAR FACTOR NF-KAPPA-B PROTEIN |
| Bpl_scaf_41128-4.16 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
| Bpl_scaf_41128-4.4 | CHONDROITIN SYNTHASE |
| Bpl_scaf_41128-4.7 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_41128-6.0 | |
| Bpl_scaf_41128-7.4 | GUANYLYL CYCLASE |
| Bpl_scaf_41128-7.5 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Bpl_scaf_41128-8.17 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| Bpl_scaf_41128-8.6 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24 |
| Bpl_scaf_41128-8.7 | TWEETY-RELATED |
| Bpl_scaf_41128-9.13 | 40S RIBOSOMAL PROTEIN S24 |
| Bpl_scaf_41128-9.16 | ANKYRIN REPEAT PROTEIN |
