Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_4075-0.1 | |
| Bpl_scaf_40761-0.7 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_40762-0.4 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN |
| Bpl_scaf_40762-1.5 | HOMEOBOX PROTEIN ARISTALESS |
| Bpl_scaf_40762-1.6 | PALMITOYLTRANSFERASE ZDHHC16 |
| Bpl_scaf_40762-2.17 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
| Bpl_scaf_40762-3.3 | CYTOCHROME C OXIDASE SUBUNIT 6B |
| Bpl_scaf_40762-4.10 | UNCHARACTERIZED |
| Bpl_scaf_40762-4.12 | UNCHARACTERIZED |
| Bpl_scaf_40762-4.9 | UNCHARACTERIZED |
| Bpl_scaf_40762-5.10 | |
| Bpl_scaf_40762-5.15 | GENE, 17359-RELATED |
| Bpl_scaf_40762-5.16 | DPY30-RELATED |
| Bpl_scaf_40762-5.21 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_40762-5.24 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 |
| Bpl_scaf_40762-5.25 | POLYCYSTIN-1 |
| Bpl_scaf_40762-5.26 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_40762-5.27 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_40782-0.11 | |
| Bpl_scaf_40782-0.12 | |
| Bpl_scaf_40782-0.13 | |
| Bpl_scaf_40782-0.14 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_40794-0.2 | |
| Bpl_scaf_40794-0.6 | |
| Bpl_scaf_40812-0.17 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_40812-0.29 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_40812-0.6 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_40812-0.9 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_40823-0.5 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_40835-0.2 | |
| Bpl_scaf_40855-0.5 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| Bpl_scaf_40855-0.9 | ZINC FINGER PROTEIN |
| Bpl_scaf_40863-0.14 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_40863-0.15 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_40863-0.17 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_40863-0.19 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_40863-0.5 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_40868-0.11 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_40868-0.41 | ENDONUCLEASE-RELATED |
| Bpl_scaf_40868-0.43 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_40868-0.44 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_40868-0.45 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_40876-0.0 | |
| Bpl_scaf_40876-0.8 | |
| Bpl_scaf_40877-0.6 | |
| Bpl_scaf_40877-1.0 | |
| Bpl_scaf_40877-1.1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_40877-2.2 | |
| Bpl_scaf_40877-2.7 | CHIMERIN FAMILY MEMBER |
| Bpl_scaf_40877-3.11 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
