Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_41035-1.12 | |
| Bpl_scaf_41035-1.14 | |
| Bpl_scaf_41035-1.15 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_41035-1.16 | |
| Bpl_scaf_41040-0.1 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Bpl_scaf_41042-0.1 | |
| Bpl_scaf_41044-0.10 | |
| Bpl_scaf_41044-0.2 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| Bpl_scaf_41044-0.23 | UNCHARACTERIZED |
| Bpl_scaf_41044-1.14 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2 |
| Bpl_scaf_41044-1.15 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
| Bpl_scaf_41044-1.16 | NUCLEAR PROTEIN LOCALIZATION 4 |
| Bpl_scaf_41044-1.19 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| Bpl_scaf_41044-1.34 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| Bpl_scaf_41044-1.35 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
| Bpl_scaf_41044-1.37 | |
| Bpl_scaf_41052-0.1 | - |
| Bpl_scaf_41052-0.5 | BETA-HEXOSAMINIDASE |
| Bpl_scaf_41052-1.0 | - |
| Bpl_scaf_41052-1.2 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
| Bpl_scaf_41052-2.10 | PROTEASE M1 ZINC METALLOPROTEASE |
| Bpl_scaf_41052-2.3 | |
| Bpl_scaf_41052-2.7 | - |
| Bpl_scaf_41052-2.9 | CARNITINE O-ACYLTRANSFERASE |
| Bpl_scaf_41063-0.15 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| Bpl_scaf_41063-0.16 | XAP-5 PROTEIN-RELATED |
| Bpl_scaf_41063-1.10 | PROTEIN DISPATCHED-RELATED |
| Bpl_scaf_41063-1.11 | HYPOTHETICAL HEAT DOMAIN-CONTAINING |
| Bpl_scaf_41063-1.13 | |
| Bpl_scaf_41063-2.11 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| Bpl_scaf_41063-2.4 | WD REPEAT-CONTAINING PROTEIN 43 |
| Bpl_scaf_41063-2.5 | COILED-COIL DOMAIN-CONTAINING 166 |
| Bpl_scaf_41063-3.10 | XANTHINE DEHYDROGENASE |
| Bpl_scaf_41063-3.15 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| Bpl_scaf_41063-4.4 | THYROTROPH EMBRYONIC FACTOR RELATED |
| Bpl_scaf_41063-4.5 | ZINC TRANSPORTER 6 |
| Bpl_scaf_41063-5.2 | ZINC FINGER PROTEIN 142 |
| Bpl_scaf_41063-5.3 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_41063-6.11 | KREV INTERACTION TRAPPED 1-RELATED |
| Bpl_scaf_41063-6.12 | |
| Bpl_scaf_41063-6.8 | PROTEIN CBG12474 |
| Bpl_scaf_41063-7.13 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_41063-7.14 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_41063-7.16 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_41063-7.30 | |
| Bpl_scaf_41063-8.5 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_41063-9.13 | |
| Bpl_scaf_41063-9.4 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Bpl_scaf_41063-9.6 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Bpl_scaf_41071-0.0 |
