Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_41071-1.8 | |
| Bpl_scaf_41071-2.0 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_41071-2.1 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_41077-0.0 | |
| Bpl_scaf_41078-0.5 | |
| Bpl_scaf_41078-0.7 | |
| Bpl_scaf_41078-0.8 | |
| Bpl_scaf_41078-0.9 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_41078-1.2 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_41078-1.4 | LITHOSTATHINE |
| Bpl_scaf_41078-2.19 | UNCHARACTERIZED |
| Bpl_scaf_41078-2.20 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
| Bpl_scaf_41078-2.21 | INHIBITOR OF GROWTH PROTEIN |
| Bpl_scaf_41084-0.4 | |
| Bpl_scaf_41089-0.20 | |
| Bpl_scaf_41089-0.3 | ZINC FINGER PROTEIN |
| Bpl_scaf_4109-0.0 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_4109-0.1 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_4109-0.7 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_4109-1.0 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_4109-1.14 | |
| Bpl_scaf_41092-0.2 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_41093-0.0 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_41094-0.0 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
| Bpl_scaf_41094-1.0 | |
| Bpl_scaf_41094-1.13 | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN |
| Bpl_scaf_41094-1.14 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| Bpl_scaf_41094-1.15 | TECTONIC FAMILY MEMBER |
| Bpl_scaf_41094-10.10 | MATRIX METALLOPROTEINASE |
| Bpl_scaf_41094-10.11 | SPHINGOMYELIN PHOSPHODIESTERASE |
| Bpl_scaf_41094-10.8 | ACYL-COA DEHYDROGENASE |
| Bpl_scaf_41094-10.9 | SUGAR KINASE |
| Bpl_scaf_41094-2.10 | RING FINGER PROTEIN-RELATED |
| Bpl_scaf_41094-2.14 | |
| Bpl_scaf_41094-2.8 | |
| Bpl_scaf_41094-2.9 | |
| Bpl_scaf_41094-3.12 | |
| Bpl_scaf_41094-3.13 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
| Bpl_scaf_41094-3.8 | UNCHARACTERIZED |
| Bpl_scaf_41094-4.7 | UNCHARACTERIZED |
| Bpl_scaf_41094-4.8 | BLEOMYCIN HYDROLASE |
| Bpl_scaf_41094-4.9 | INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 |
| Bpl_scaf_41094-5.4 | ROLLING PEBBLES, ISOFORM B |
| Bpl_scaf_41094-6.8 | METALLOPROTEASE INHIBITOR |
| Bpl_scaf_41094-6.9 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| Bpl_scaf_41094-7.12 | |
| Bpl_scaf_41094-7.20 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_41094-7.7 | |
| Bpl_scaf_41094-8.1 | |
| Bpl_scaf_41094-8.5 | MOLTING PROTEIN MLT-4 |
