About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16301SH3 DOMAIN AND TETRATRICOPEPTIDE REPEATS CONTAINING PROTEIN
HS16302ACTIN-BINDING LIM PROTEIN
HS16303ACTIN FILAMENT-ASSOCIATED PROTEIN 1 FAMILY MEMBER
HS16304PROTEIN CBG11839-RELATED
HS16305
HS16306
HS16307FORKHEAD BOX PROTEIN
HS16308WNT RELATED
HS16309WNT RELATED
HS16310THYMOSIN BETA
HS16311IONOTROPIC GLUTAMATE RECEPTOR
HS16312
HS16313T-CELL IMMUNOGLOBULIN AND MUCIN DOMAIN CONTAINING TIM
HS16314TYROSINE-PROTEIN KINASE
HS16315CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
HS16316HYALURONAN MEDIATED MOTILITY RECEPTOR
HS16317
HS16318TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS16319TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS16320CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 1
HS16321LONG-CHAIN-FATTY-ACID--COA LIGASE
HS16322NUCLEAR TRANSPORT FACTOR 2
HS16323ANKYRIN REPEAT FAMILY A
HS16324INHIBITOR OF APOPTOSIS
HS16325STROMAL ANTIGEN
HS16326
HS16327EPHRIN
HS16328KNIRPS-RELATED PROTEIN-RELATED
HS16329MERLIN/MOESIN/EZRIN/RADIXIN
HS16330REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS16331ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN
HS163322-5A-DEPENDENT RIBONUCLEASE
HS16333RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4
HS16334PROTEIN CBG26694
HS16335
HS16336TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS16337SH2 DOMAIN-CONTAINING PROTEIN
HS16338CELL ADHESION MOLECULE
HS16339MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER
HS16340CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS
HS16341POU DOMAIN
HS16342RIBOSOMAL PROTEIN S6 KINASE
HS16343POU DOMAIN
HS16344TRANSMEMBRANE PROTEIN 182-RELATED
HS16345RCG36411
HS16346SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN
HS16347NONHISTONE CHROMOSOMAL PROTEIN HMG
HS16348PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
HS16349G-PROTEIN COUPLED RECEPTOR
HS16350T-BOX PROTEIN-RELATED
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