About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16051NUCLEAR RECEPTOR COACTIVATOR
HS16052DNA-BINDING PROTEIN INHIBITOR
HS16053PROTEIN KINASE C-BINDING PROTEIN 1
HS16054TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
HS16055
HS16056OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR
HS16057POTASSIUM CHANNEL, SUBFAMILY K
HS16058CADHERIN-23
HS16059TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4
HS16060SCD6 PROTEIN-RELATED
HS16061
HS16062DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN
HS16063TGF-BETA FAMILY
HS16064MRNA EXPORT FACTOR AND BUB3
HS16065GEO13361P1-RELATED
HS16066TRANSCRIPTIONAL ADAPTER 3-RELATED
HS16067ARP2/3 COMPLEX 20 KD SUBUNIT
HS160686-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
HS16069SERINE/THREONINE-PROTEIN KINASE
HS16070NETRIN/LAMININ-RELATED
HS16071COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4
HS16072SECY/SEC61-ALPHA FAMILY MEMBER
HS16073INOSITOL POLYPHOSPHATE KINASE
HS16074NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS16075CELL DEATH ACTIVATOR CIDE
HS16076UROCORTIN-2 AND 3
HS16077METALLOPROTEASE
HS16078TUBULIN MONOGLYCYLASE TTLL3
HS16079DC12-RELATED
HS16080RAB FAMILY
HS16081RIBOPHORIN I
HS16082TRANSCRIPTION FACTOR GATA FAMILY MEMBER
HS16083INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS16084INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS16085INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS16086
HS16087VACUOLAR MEMBRANE PROTEIN YPL162C
HS16088SERINE/THREONINE-PROTEIN KINASE
HS16089FACIOGENITAL DYSPLASIA PROTEIN
HS16090UBIQUITIN-ACTIVATING ENZYME E1
HS16091TATA ELEMENT MODULATORY FACTOR TMF1
HS16092GLYCOSYLTRANSFERASE
HS16093CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS16094CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS16095SUCCINYL-COA SYNTHETASE BETA CHAIN
HS16096MONOCARBOXYLATE TRANSPORTER
HS16097
HS16098SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS16099SI:CH211-196P9.1-RELATED
HS16100S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN
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