About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15751REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS15752EXTRA SPINDLE POLES 1-RELATED
HS15753REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS15754PREFOLDIN SUBUNIT 5
HS15755LUPUS LA PROTEIN-RELATED
HS15756CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
HS15757DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
HS15758CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN B
HS15759RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
HS15760METHYLTRANSFERASE LIKE 7B
HS15761VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS15762ANION EXCHANGE PROTEIN
HS15763
HS15764TUBULIN MONOGLYCYLASE TTLL3
HS15765BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS15766MIR DOMAIN-CONTAINING PROTEIN
HS15767SULFATASE MODIFYING FACTOR 1, 2
HS15768SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS15769SORTING NEXIN FAMILY MEMBER
HS15770
HS15771MUSCLEBLIND-LIKE PROTEIN
HS15772EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
HS15773DELTEX-RELATED
HS15774LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS15775CELL ADHESION MOLECULE
HS15776RNA BINDING PROTEIN
HS15777BAX INHIBITOR-RELATED
HS15778NUCLEAR HORMONE RECEPTOR
HS15779NUCLEAR HORMONE RECEPTOR
HS15780SKICH DOMAIN-CONTAINING PROTEIN
HS15781SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE
HS15782IP01015P-RELATED
HS15783OS06G0237300 PROTEIN
HS15784RAN BINDING PROTEIN 9-RELATED
HS15785INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN
HS15786PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
HS15787CENTAURIN-GAMMA-1A
HS15788CELL DIVISION PROTEIN KINASE
HS15789E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE
HS157903-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE
HS15791-
HS15792MICROSPHERULE PROTEIN 1
HS15793SULFITE REDUCTASE
HS15794CYTOCHROME P450 508A4-RELATED
HS15795MATRIX METALLOPROTEINASE
HS15796TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER
HS15797TIMEOUT/TIMELESS-2
HS15798GLIAL FIBRILLARY ACIDIC PROTEIN
HS15799MELANOCYTE PROTEIN PMEL 17-RELATED
HS15800CELL DIVISION PROTEIN KINASE
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