About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15601RAD54-LIKE
HS15602UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS15603PICCOLO/BASSOON
HS15604PICCOLO/BASSOON
HS15605ELKS/RAB6-INTERACTING/CAST PROTEIN
HS15606INTERLEUKIN-17 RECEPTOR
HS15607INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS15608SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
HS15609NINJURIN-RELATED
HS15610CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 19
HS15611
HS15612BICAUDAL D FAMILY MEMBER
HS15613TRANSKETOLASE
HS15614VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS15615OPSIN
HS15616VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS15617
HS15618CEREBRAL PROTEIN-11-RELATED
HS15619ZINC FINGER MYM-TYPE PROTEIN
HS15620MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
HS15621WD40 REPEAT PROTEIN SWD2
HS15622TWINFILIN
HS15623
HS15624PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS15625RHO FAMILY GTPASE
HS15626UNCHARACTERIZED
HS15627RAB GDP-DISSOCIATION INHIBITOR
HS15628NUCLEAR PROTEIN E3-3
HS15629SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN
HS15630MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
HS15631CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
HS15632RNA RECOGNITION MOTIF-CONTAINING
HS15633ZYX102 PROTEIN
HS15634TRANSMEMBRANE PROTEIN 82
HS15635ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
HS15636RE38146P
HS15637F-BOX ONLY PROTEIN 42
HS15638SUZ DOMAIN-CONTAINING PROTEIN 1
HS15639CENTROSOMAL PROTEIN 2
HS15640MICROFIBRILLAR-ASSOCIATED PROTEIN 2
HS15641SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
HS1564239S RIBOSOMAL PROTEIN L20
HS15643PUTATIVE ATP-ASE
HS15644TRANSMEMBRANE PROTEIN 240
HS15645RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
HS15646FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 10
HS15647TASTE RECEPTOR TYPE 2
HS15648TASTE RECEPTOR TYPE 2
HS15649COLLAGEN ALPHA
HS15650TRANSMEMBRANE PROTEIN 88-RELATED
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