About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15351SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
HS15352
HS15353SYNAPTONEMAL COMPLEX PROTEIN 1
HS15354CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS15355PROTEIN PHOSPHATASE 2C
HS15356RHO FAMILY GTPASE
HS15357DNA2/NAM7 HELICASE FAMILY
HS15358F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
HS15359NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
HS15360SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS15361OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS15362GNAT FAMILY N-ACETYLTRANSFERASE
HS15363-
HS15364NFAT
HS15365MANNOSIDASE, BETA A, LYSOSOMAL-LIKE, MANBAL PROTEIN
HS15366TYROSINE-PROTEIN KINASE
HS15367ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 1
HS15368VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
HS15369RAS-RELATED PROTEIN RAB
HS15370CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX14
HS15371BICOID-INTERACTING PROTEIN RELATED
HS15372LONGEVITY ASSURANCE FACTOR 1 LAG1
HS15373GLYCEROL-3-PHOSPHATE DEHYDROGENASE
HS15374SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
HS15375AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
HS15376CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS15377KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS15378
HS15379
HS15380GLUTAMINASE
HS15381SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
HS15382BLOC-1 COMPLEX SUBUNIT 1
HS15383HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS15384PEROXISOMAL MEMBRANE PROTEIN 4
HS15385PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS15386EYES ABSENT
HS15387
HS15388PROTEIN C20ORF43 HOMOLOG
HS15389GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
HS15390TRANSCRIPTION FACTOR AP-2
HS15391CADHERIN-23
HS15392
HS15393SERINE/THREONINE-PROTEIN KINASE PIM
HS15394DNA2/NAM7 HELICASE FAMILY
HS15395TBC1 DOMAIN FAMILY MEMBER 20/GTPASE
HS15396UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
HS15397EF-HAND DOMAIN-CONTAINING PROTEIN
HS15398MTG8 ETO EIGHT TWENTY ONE PROTEIN
HS15399SYNTROPHIN
HS15400AGAP000281-PA
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