About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15451SHISA
HS15452CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
HS15453WD REPEAT-CONTAINING PROTEIN 55
HS15454B9 DOMAIN-CONTAINING
HS15455DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS15456
HS1545760S RIBOSOMAL PROTEIN L29
HS15458SOLEUCYL-TRNA SYNTHETASE
HS15459GLIAL FIBRILLARY ACIDIC PROTEIN
HS15460CATION TRANSPORTING ATPASE
HS15461SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS15462SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS154635-HYDROXYTRYPTAMINE RECEPTOR
HS15464UBIQUITIN-ACTIVATING ENZYME E1
HS15465TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4
HS15466
HS15467UNCHARACTERIZED
HS15468SYNAPSIN
HS15469METALLOPROTEASE INHIBITOR
HS15470VOLTAGE-GATED POTASSIUM CHANNEL
HS15471-
HS15472SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
HS15473NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS15474CAVEOLIN
HS15475RNA-BINDING PROTEIN
HS15476TESTIS-EXPRESSED PROTEIN 264
HS15477AMINO ACID TRANSPORTER
HS15478GTP-BINDING PROTEIN ALPHA SUBUNIT
HS15479PAK4-INHIBITOR INKA1-RELATED
HS15480UBIQUITIN-ACTIVATING ENZYME E1
HS15481TYROSINE-PROTEIN KINASE RECEPTOR
HS15482SERINE/THREONINE-PROTEIN KINASE
HS15483RNA-BINDING PROTEIN
HS15484SEMAPHORIN
HS15485GTP-BINDING PROTEIN ALPHA SUBUNIT
HS15486ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
HS15487ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8
HS15488SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED
HS15489GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS15490UNCHARACTERIZED
HS15491EPH RECEPTOR A5
HS15492GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD
HS15493FATTY ACID BINDING PROTEIN
HS15494CORTISTATIN
HS15495RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
HS15496GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
HS15497SIMILAR TO RIKEN CDNA 6430571L13 GENE, SIMILAR TO G20 PROTEIN
HS15498HIGH MOBILITY GROUP PROTEINS HMG-A AND C
HS15499PLASMINOGEN-RELATED
HS15500PROTEIN ABHD14B-LIKE
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