About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15201ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2
HS15202INTERLEUKIN-17 RECEPTOR
HS15203RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
HS15204
HS15205UNCHARACTERIZED
HS15206
HS15207UNCHARACTERIZED
HS15208
HS15209INOSITOL POLYPHOSPHATE KINASE
HS1521030S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
HS15211VACUOLAR ATP SYNTHASE SUBUNIT S1
HS15212CARBON CATABOLITE REPRESSOR PROTEIN 4
HS15213SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
HS15214LIM DOMAIN-CONTAINING PROTEIN
HS15215MONOACYLGLYCEROL LIPASE
HS15216RIBONUCLEASE P PROTEIN SUBUNIT P14
HS15217HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED
HS15218PX SERINE/THREONINE KINASE PXK
HS15219COILED-COIL DOMAIN-CONTAINING PROTEIN 71
HS15220DEHYDROGENASE RELATED
HS15221
HS15222POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
HS15223STABILIN
HS15224E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS15225NISCHARIN RELATED
HS15226
HS15227PROTEIN CBG11839-RELATED
HS15228
HS15229PROTEIN HGH1 HOMOLOG
HS15230-
HS15231RETINOBLASTOMA-BINDING PROTEIN 5
HS15232INOSITOL POLYPHOSPHATE KINASE 1
HS15233CENTROMERE PROTEIN P
HS15234EXTRACELLULAR MATRIX PROTEIN 2-RELATED
HS15235AGAP008170-PA
HS15236EPIPHYCAN-RELATED
HS15237SPLICING FACTOR 3B SUBUNIT 4
HS15238PROSAPOSIN RECEPTOR GPR37 FAMILY MEMBER
HS15239CATION TRANSPORTING ATPASE
HS15240
HS15241PARATHYROID HORMONE-RELATED
HS15242ETHANOLAMINEPHOSPHOTRANSFERASE
HS15243FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
HS15244BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89
HS15245CYSTEINE DESULFURYLASE FAMILY MEMBER
HS15246HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
HS15247COPINE
HS15248FER-1-LIKE
HS15249ASAP FAMILY MEMBER
HS15250ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
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