About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14951ANKYRIN REPEAT-CONTAINING
HS14952ANKYRIN DOMAIN-CONTAINING
HS14953
HS14954RHOMBOID-RELATED PROTEIN
HS14955DACHSHUND
HS14956MITOTIC-SPINDLE ORGANIZING PROTEIN 1
HS14957UNCHARACTERIZED
HS14958RIBONUCLEASE
HS14959PROGESTERONE-INDUCED BLOCKING FACTOR 1
HS14960KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS14961PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 5
HS14962CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2
HS14963SERINE PROTEASE INHIBITOR, SERPIN
HS14964ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS14965ZINC FINGER PROTEIN
HS14966HOMEOBOX PROTEIN HMX
HS14967HOMEOBOX PROTEIN HMX
HS14968G-PROTEIN COUPLED RECEPTOR
HS14969CARBOHYDRATE SULFOTRANSFERASE 15
HS14970REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14971HOMEOBOX PROTEIN NKX
HS14972-
HS14973PROTEIN-LYSINE N-METHYLTRANSFERASE METTL10
HS14974ABRAXAS FAMILY MEMBER
HS14975UBIQUITIN THIOESTERASE
HS14976C-TERMINAL-BINDING PROTEIN
HS14977PROTEIN DIAPHANOUS
HS14978ERYTHROID DIFFERENTIATION-RELATED FACTOR 1
HS14979ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
HS14980ALMS1-RELATED
HS14981INHIBITORY SYNAPTIC FACTOR 2A-RELATED
HS14982RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS14983GONADOLIBERIN
HS14984METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE
HS14985TRANSCRIPTION FACTOR COE FAMILY MEMBER
HS14986PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
HS14987RE48077P
HS14988ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS14989SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
HS14990MAX DIMERIZATION, MAD
HS14991ADDUCIN
HS14992SORTILIN RELATED
HS14993SORTILIN RELATED
HS14994NEURALIZED
HS14995SH3 MULTIPLE DOMAIN
HS14996PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS14997COLLAGEN ALPHA
HS14998SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1 HOMOLOG
HS14999UNCHARACTERIZED
HS15000-
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