About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14701HOMEOBOX PROTEIN MSX
HS14702
HS14703FUCOSE MUTAROTASE
HS14704ENOYL-COA HYDRATASE-RELATED
HS14705SHADOW OF PRION PROTEIN
HS14706MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1
HS14707FLAVIN MONOAMINE OXIDASE
HS14708RASSF
HS14709PROTEIN DEPP1
HS14710
HS14711TRANSMEMBRANE PROTEIN 72
HS14712
HS14713SNF2/RAD54 FAMILY MEMBER
HS14714
HS14715HOMEOBOX PROTEIN ARISTALESS
HS14716CARDIAC-ENRICHED FHL2-INTERACTING PROTEIN-RELATED
HS14717V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS14718BLUE CHEESE
HS14719LEUCINE-RICH REPEAT-CONTAINING
HS14720ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
HS14721SPERMATHECAL PHYSIOLOGY VARIANT
HS14722MITOGEN-ACTIVATED PROTEIN KINASE
HS14723TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
HS14724TGF-BETA FAMILY
HS14725AGAP007109-PA
HS14726ANTHRAX TOXIN RECEPTOR
HS14727ARM REPEAT SUPERFAMILY PROTEIN
HS14728UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED
HS14729PALMITOYLTRANSFERASE ZDHHC16
HS14730HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
HS14731SUPPRESSOR OF FUSED
HS14732
HS14733B-BOX DOMAIN CONTAINING
HS14734NUCLEOPLASMIN
HS14735O-GLCNACASE
HS14736PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED
HS14737LIM DOMAIN-BINDING PROTEIN
HS14738PROMININ PROM PROTEIN
HS14739HERMANSKY-PUDLAK SYNDROME 6 PROTEIN
HS14740CALCIUM BINDING PROTEINS
HS14741CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15
HS14742COPPER HOMEOSTASIS PROTEIN CUTC
HS14743ATP-BINDING CASSETTE SUB-FAMILY C
HS14744G-PROTEIN COUPLED RECEPTOR
HS14745RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
HS14746SLIT HOMOLOG
HS14747GENE 340-RELATED
HS14748
HS14749ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
HS14750SIALYLTRANSFERASE
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