About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14501PEROXISOMAL MEMBRANE PROTEIN PEX13
HS14502NUCLEAR FACTOR NF-KAPPA-B PROTEIN
HS14503POLY A POLYMERASE
HS145043-HYDROXYANTHRANILATE 3,4-DIOXYGENASE
HS14505TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER
HS14506CCCH ZINC FINGER/TIS11-RELATED
HS14507THADA/DEATH RECEPTOR INTERACTING PROTEIN
HS14508PLEKHH PROTEIN
HS14509PLEKHH PROTEIN
HS14510TUMOR-ASSOCIATED CALCIUM SIGNAL TRANSDUCER
HS14511FIBRILLIN-RELATED
HS14512EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS14513MUCIN 4-RELATED
HS14514CALCIUM BINDING PROTEIN
HS14515TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
HS14516MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
HS14517HOMEOBOX PROTEIN ARISTALESS
HS14518AAA DOMAIN-CONTAINING
HS14519PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS14520OPSIN
HS14521COLLAGEN ALPHA
HS14522STRIATIN
HS14523HYPOTHETICAL HEAT DOMAIN-CONTAINING
HS14524UNCHARACTERIZED
HS14525EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS14526EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS14527EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS14528REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14529MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS14530MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20
HS14531RBP-RELATED
HS14532REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS14533GERANYLGERANYL PYROPHOSPHATE SYNTHASE
HS14534BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS14535GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
HS14536BEIGE/BEACH-RELATED
HS14537VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
HS14538INTEGRAL MEMBRANE PROTEIN GPR137
HS14539EGL NINE HOMOLOG-RELATED
HS14540TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X
HS14541DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
HS14542RAP GTPASE-ACTIVATING PROTEIN
HS14543UNCHARACTERIZED
HS14544CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE
HS14545SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS14546KELCH DOMAIN-CONTAINING PROTEIN 3
HS14547HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
HS14548PROTEIN CBG26694
HS14549-
HS14550ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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