About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS14751HERMANSKY-PUDLAK SYNDROME PROTEIN 1
HS14752HEPARANASE
HS14753
HS14754ASPARTATE AMINOTRANSFERASE
HS14755HOMEOBOX PROTEIN NKX
HS14756HOMEOBOX PROTEIN NKX
HS14757MITOFERRIN-1-RELATED
HS14758PHYTOENE DEHYDROGENASE
HS14759TETRATRICOPEPTIDE REPEAT PROTEIN 31
HS14760LYSYL OXIDASE-LIKE-RELATED
HS14761CARTILAGE ACIDIC PROTEIN 1
HS14762GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7
HS14763FRIZZLED
HS14764ZINC FINGER PROTEIN 385B-LIKE
HS14765ARGININE VASOPRESSIN-INDUCED PROTEIN 1
HS14766MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS14767PHOSPHOGLYCERATE MUTASE
HS14768SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2
HS14769CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS
HS14770AN1-TYPE ZINC FINGER PROTEIN 4
HS14771LD02310P
HS14772LIPOXYGENASE
HS14773SOLUTE CARRIER FAMILY 25
HS14774UNCHARACTERIZED
HS14775EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
HS14776FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
HS14777IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
HS14778CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN
HS14779WINGED HELIX DOMAIN-CONTAINING PROTEIN
HS14780IP01015P-RELATED
HS14781B-BOX DOMAIN CONTAINING
HS14782FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
HS14783S-ADENOSYLMETHIONINE SYNTHETASE
HS14784
HS14785
HS14786SIDEROFLEXIN
HS14787PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
HS14788ZIPPER PUTATIVE TUMOR SUPPRESSOR 2 HOMOLOG-LIKE PROTEIN-RELATED
HS14789SEMAPHORIN
HS14790APOPTOSIS-STIMULATING OF P53 PROTEIN
HS14791EXPORTIN 1/5
HS14792EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS14793MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS14794LEUCINE-RICH REPEAT-CONTAINING PROTEIN
HS14795FER-1-LIKE
HS14796POLY ADP-RIBOSE GLYCOHYDROLASE
HS147972-OXOGLUTARATE DEHYDROGENASE
HS14798CARNITINE O-ACYLTRANSFERASE
HS14799-
HS14800OPSIN
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