About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15101VPRBP PROTEIN-RELATED
HS15102TUBULIN
HS15103G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS15104GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS15105NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
HS15106RETROTRANSPOSON
HS15107CYTOCHROME C OXIDASE SUBUNIT 6C
HS15108SERINE/THREONINE-PROTEIN KINASE TAO
HS15109VOLTAGE-GATED POTASSIUM CHANNEL
HS15110CYTOCHROME C OXIDASE SUBUNIT 6C
HS15111G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS15112G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS15113COLLAGEN ALPHA
HS15114RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS
HS15115TRANSMEMBRANE PROTEIN 74
HS15116DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
HS15117RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
HS15118PROTEASOME INHIBITOR
HS15119GPI TRANSAMIDASE COMPONENT PIG-U
HS15120PODOCALYXIN-LIKE PROTEIN 2
HS15121BLADDER CANCER 10 KD PROTEIN HOMOLOG
HS15122PROTEIN KINASE PKN/PRK1, EFFECTOR
HS15123
HS15124CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
HS15125CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
HS15126
HS15127SUSHI DOMAIN-CONTAINING PROTEIN 1
HS151281-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER
HS15129BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS15130GH11727P
HS15131
HS15132PHOSPHATIDYLINOSITOL KINASE
HS15133DOWN REGULATED IN RENAL CARCINOMA 1/TU3A
HS15134MAKORIN-RELATED
HS15135TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
HS15136MKRN2 OPPOSITE STRAND PROTEIN
HS15137TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
HS15138SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED
HS15139
HS15140ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
HS15141ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
HS15142PRE-MRNA-SPLICING FACTOR ISY1
HS15143REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS15144
HS15145CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
HS15146E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS15147PHOSPHORYLATED CTD INTERACTING FACTOR 1
HS15148E3 UBIQUITIN-PROTEIN LIGASE RNF182
HS15149DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1
HS15150DNA-DIRECTED RNA POLYMERASE I,II,III
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