About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS15901PLEXIN
HS15902PEPTIDYL-TRNA HYDROLASE 2
HS15903UPSET, ISOFORM A
HS15904LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS15905MYOTUBULARIN-RELATED
HS15906
HS15907
HS15908REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS15909COPINE
HS15910ZINC FINGER PROTEIN
HS15911KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS15912ALDEHYDE DEHYDROGENASE-RELATED
HS15913SI:CH211-266K22.6
HS15914P53 AND DNA DAMAGE-REGULATED PROTEIN
HS15915ENDOTHELIN
HS15916
HS15917ZINC FINGER PROTEIN 831
HS15918CLEAVAGE STIMULATION FACTOR SUBUNIT 1
HS15919CAS SCAFFOLDING PROTEIN
HS15920CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
HS15921PHD/F-BOX CONTAINING PROTEIN
HS15922HOMEO BOX HB9 LIKE A-RELATED
HS15923TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS15924
HS15925
HS15926UNCHARACTERIZED
HS15927ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS15928ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS15929ANOSMIN
HS15930UNCHARACTERIZED
HS15931NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS15932TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS15933UNCHARACTERIZED
HS15934ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS15935ZINC FINGER PROTEIN ZIC AND GLI
HS15936UNCHARACTERIZED
HS15937
HS15938
HS15939
HS15940WNT RELATED
HS15941EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS15942HISTONE DEACETYLASE HDAC1-RELATED
HS15943REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS15944GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS15945ACYL-COA DEHYDROGENASE
HS15946SI:DKEY-57N24.6
HS15947
HS15948CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57
HS15949LEPRECAN 1
HS15950CLAUDIN
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