About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16201CGI-141-RELATED/LIPASE CONTAINING PROTEIN
HS16202PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN
HS16203UNCHARACTERIZED
HS16204PAXILLIN-RELATED
HS16205UNCHARACTERIZED
HS16206DNAJ HOMOLOG SUBFAMILY C MEMBER 11
HS16207
HS16208RAB GTPASE-BINDING EFFECTOR PROTEIN
HS16209
HS16210VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
HS16211CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT
HS16212FI01459P
HS16213MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
HS16214N-ACETYLGALACTOSAMINYLTRANSFERASE
HS16215
HS16216DUF614 FAMILY PROTEIN-RELATED
HS16217HISTONE H3
HS16218BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS16219SAP30
HS16220
HS16221IONOTROPIC GLUTAMATE RECEPTOR
HS16222PROTEIN EIGER
HS16223
HS16224RING FINGER PROTEIN 17
HS16225CONNEXIN
HS16226CONNEXIN
HS16227VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21
HS16228REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS16229ZNF185
HS16230ZNF185
HS16231ALPHA- 1,3 -FUCOSYLTRANSFERASE
HS16232RAB FAMILY
HS16233-
HS16234MYELIN PROTEOLIPID
HS16235CADHERIN-87A
HS16236NEUROLIGIN
HS16237DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS16238ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
HS16239
HS16240TYROSINE-PROTEIN KINASE RECEPTOR
HS16241MSF1/PX19 RELATED
HS16242
HS16243AGAP004327-PA
HS16244ATP-DEPENDENT RNA HELICASE DBP3
HS16245
HS16246BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS16247NETRIN RECEPTOR UNC5
HS16248PROTEIN CBG11839-RELATED
HS16249PDZ AND LIM DOMAIN PROTEIN ZASP
HS16250CLATHRIN LIGHT CHAIN
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