About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16101MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED
HS16102
HS16103ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS16104LIM DOMAIN-CONTAINING PROTEIN
HS16105SOLUTE CARRIER FAMILY 2
HS1610626S PROTESOME SUBUNIT 6
HS16107ATAXIN 7 RELATED
HS16108MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED
HS16109DYNAMIN
HS16110DYNAMIN
HS16111DYNAMIN
HS16112DYNAMIN
HS16113SYNAPTOPHYSIN
HS16114ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
HS16115ZINC FINGER PROTEIN
HS16116CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR
HS16117TRANSMEMBRANE PROTEIN 128
HS16118PROTON CHANNEL OTOP
HS16119ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS16120SOLUTE CARRIER FAMILY 2
HS16121WD-REPEATCONTAINING PROTEIN WDR1
HS16122DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
HS16123RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS16124GONADOLIBERIN
HS16125ZINC FINGER PROTEIN 385B-LIKE
HS16126CALPASTATIN
HS16127CALPASTATIN
HS16128
HS16129PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS16130GLYCOSYLTRANSFERASE-RELATED
HS16131OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS16132GLUTAREDOXIN-1
HS16133SPECKLE-TYPE POZ PROTEIN
HS16134FERREDOXIN-RELATED
HS16135ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS16136DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT
HS16137UBIQUITIN-CONJUGATING ENZYME E2
HS16138HEME TRANSPORTER HRG1
HS16139BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS16140HISTONE DEACETYLASE HDAC1-RELATED
HS16141NUCLEAR HORMONE RECEPTOR
HS16142TENSIN
HS16143EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
HS16144
HS16145INTERMEDIATE FILAMENT
HS16146GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS16147GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS16148V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS16149PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS16150RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
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