About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16151RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
HS16152PROTEIN CBG11839-RELATED
HS16153DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS16154HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS16155
HS16156MYOSIN REGULATORY LIGHT CHAIN 2
HS16157LIPIN
HS16158B-BOX DOMAIN CONTAINING
HS16159TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1
HS16160COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6
HS16161-
HS16162PLEXIN
HS16163RAC GTPASE-ACTIVATING PROTEIN 1
HS16164MAJOR INTRINSICALLY DISORDERED NOTCH2-BINDING RECEPTOR 1 MINAR1 FAMILY MEMBER
HS16165LIMBIN/ELLIS-VAN CREVELD PROTEIN
HS16166LIMBIN/ELLIS-VAN CREVELD PROTEIN
HS16167LIMBIN/ELLIS-VAN CREVELD PROTEIN
HS16168CYTOKINE-LIKE PROTEIN 1
HS16169
HS16170HOMEOBOX PROTEIN MSX
HS16171AGAP001331-PA-RELATED
HS16172SYNTAXIN-18
HS16173
HS16174
HS16175NEURONAL VESICLE TRAFFICKING-ASSOCIATED PROTEIN 2-RELATED
HS16176ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1
HS16177TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2
HS16178LYSYL OXIDASE-LIKE-RELATED
HS16179GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88
HS16180GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7
HS1618160S ACIDIC RIBOSOMAL PROTEIN P0
HS16182F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
HS16183PROTEIN KISH-B
HS16184MITOGEN-ACTIVATED PROTEIN KINASE
HS16185LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS16186PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
HS16187
HS16188CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
HS16189COPINE
HS16190CADHERIN DOMAIN-CONTAINING PROTEIN
HS16191BCL-2-LIKE PROTEIN 15
HS16192OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS16193KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS16194GTP-BINDING PROTEIN-RELATED
HS16195MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT
HS16196CAMK FAMILY PROTEIN KINASE
HS16197SERINE/THREONINE-PROTEIN KINASE
HS16198COILED-COIL DOMAIN-CONTAINING PROTEIN 3
HS16199ETS
HS16200VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
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