About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16251HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
HS16252MASK PROTEIN
HS16253HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
HS16254RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
HS16255TRANSFORMING GROWTH FACTOR ALPHA
HS16256CARDIAC-ENRICHED FHL2-INTERACTING PROTEIN-RELATED
HS16257MACROPHAGE ERYTHROBLAST ATTACHER-RELATED
HS16258
HS16259NEDD4-BINDING PROTEIN 3
HS16260PLATELET-DERIVED GROWTH FACTOR RECEPTOR LIKE
HS16261INNER MEMBRANE TRANSPORTER YGJI-RELATED
HS16262ANNEXIN
HS16263TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER
HS16264GLUTATHIONE PEROXIDASE
HS16265
HS16266DYNACTIN P62 SUBUNIT
HS16267
HS16268PUTATIVE-RELATED
HS16269
HS16270TETRASPANIN
HS16271PROTEIN CBG11839-RELATED
HS16272ALPHA CATENIN
HS16273AGAP008170-PA
HS16274
HS16275SYNUCLEIN
HS16276
HS16277
HS16278CADHERIN-23
HS16279GH10160P
HS16280FAS-ASSOCIATED PROTEIN
HS16281-
HS16282CAMK FAMILY PROTEIN KINASE
HS16283ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS16284HOMEOBOX PROTEIN MSX
HS16285CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB
HS16286
HS16287STANNIOCALCIN
HS16288HOMEOBOX PROTEIN NKX
HS16289BNIP1-RELATED
HS16290VACUOLAR ATP SYNTHASE SUBUNIT H
HS1629160S RIBOSOMAL PROTEIN L26 FAMILY MEMBER
HS16292PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
HS16293LEUCOKININ RECEPTOR-RELATED
HS16294ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
HS16295UNCHARACTERIZED
HS16296U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11
HS16297EPSIN/ENT-RELATED
HS16298TRANSCRIPTION FACTOR COE FAMILY MEMBER
HS16299
HS16300ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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