About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16401
HS16402PHOSPHATIDYLINOSITOL GLYCAN-RELATED
HS16403
HS16404TRANSLATION FACTOR GUF1-RELATED
HS16405NEUROTRANSMITTER GATED ION CHANNEL
HS16406NEUROTRANSMITTER GATED ION CHANNEL
HS16407UNCHARACTERIZED
HS16408AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN
HS16409SMAD
HS16410RING ZINC FINGER PROTEIN
HS16411INTEGRAL MEMBRANE PROTEIN GPR137
HS16412PHOSPHOLIPASE D - RELATED
HS16413SMALL INTEGRAL MEMBRANE PROTEIN 19
HS16414
HS16415PROTEIN FAM199X
HS16416COMM DOMAIN CONTAINING PROTEIN 5
HS16417RING FINGER PROTEIN 127
HS16418KIAA1210 / KIAA1211 FAMILY MEMBER
HS16419HISTIDINE TRIAD HIT PROTEIN MEMBER
HS16420IDURONATE 2-SULFATASE
HS16421AF4/FMR2 FAMILY MEMBER
HS16422AF4/FMR2 FAMILY MEMBER
HS16423FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN
HS16424-
HS16425CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
HS16426SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS16427HISTONE DEACETYLASE HDAC1-RELATED
HS16428SI:CH211-243P7.3-RELATED
HS16429
HS16430SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS16431UNCHARACTERIZED
HS16432C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS16433REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS16434INTERFERON REGULATORY FACTOR
HS16435CASPASE
HS16436CENTROMERE PROTEIN U
HS16437LONG-CHAIN-FATTY-ACID--COA LIGASE
HS16438SIALYLTRANSFERASE
HS16439DNA-DIRECTED RNA POLYMERASE
HS16440PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3
HS16441FIMBRIN/PLASTIN
HS16442CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS16443FIBRINOGEN ALPHA CHAIN
HS16444SORTING NEXIN
HS16445CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN
HS16446C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS16447ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS16448REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS16449INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS16450C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
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