Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_001472-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
LLU|FUN_001473-T1 | NF-KAPPA-B ESSENTIAL MODULATOR |
LLU|FUN_001474-T1 | |
LLU|FUN_001475-T1 | |
LLU|FUN_001476-T1 | |
LLU|FUN_001477-T1 | CALPAIN |
LLU|FUN_001478-T1 | PROTEIN C20ORF43 HOMOLOG |
LLU|FUN_001479-T1 | UNCHARACTERIZED |
LLU|FUN_001480-T1 | LYSOPHOSPHOLIPASE-RELATED |
LLU|FUN_001481-T1 | RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 |
LLU|FUN_001482-T1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
LLU|FUN_001483-T1 | |
LLU|FUN_001484-T1 | |
LLU|FUN_001485-T1 | |
LLU|FUN_001486-T1 | |
LLU|FUN_001487-T1 | |
LLU|FUN_001488-T1 | |
LLU|FUN_001489-T1 | DUF853 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_001490-T1 | EXPORTED SERINE/THREONINE PROTEIN KINASE |
LLU|FUN_001491-T1 | |
LLU|FUN_001492-T1 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
LLU|FUN_001493-T1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
LLU|FUN_001494-T1 | |
LLU|FUN_001495-T1 | |
LLU|FUN_001496-T1 | LD39211P |
LLU|FUN_001497-T1 | LEUCINE-RICH REPEAT-CONTAINING |
LLU|FUN_001498-T1 | PEROXISOMAL BIOGENESIS FACTOR 19 |
LLU|FUN_001499-T1 | |
LLU|FUN_001500-T1 | TRANSMEMBRANE PROTEIN 136 |
LLU|FUN_001501-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_001502-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_001503-T1 | |
LLU|FUN_001504-T1 | MUTATED IN BLADDER CANCER 1 |
LLU|FUN_001505-T1 | XPA-BINDING PROTEIN 1-RELATED |
LLU|FUN_001506-T1 | COMM DOMAIN CONTAINING PROTEIN 10 |
LLU|FUN_001507-T1 | |
LLU|FUN_001508-T1 | |
LLU|FUN_001509-T1 | |
LLU|FUN_001510-T1 | |
LLU|FUN_001511-T1 | PROTEIN FAM221A-RELATED |
LLU|FUN_001512-T1 | |
LLU|FUN_001513-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
LLU|FUN_001514-T1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
LLU|FUN_001515-T1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
LLU|FUN_001516-T1 | |
LLU|FUN_001517-T1 | RIBOSOMAL PROTEIN S7 |
LLU|FUN_001518-T1 | UNCHARACTERIZED |
LLU|FUN_001519-T1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
LLU|FUN_001520-T1 | LAMIN DM0-RELATED |
LLU|FUN_001521-T1 |