About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s029.g0090.t1
Lsat_s029.g0091.t1
Lsat_s029.g0092.t1
Lsat_s029.g0093.t1
Lsat_s029.g0094.t1
Lsat_s029.g0095.t1
Lsat_s029.g0096.t1
Lsat_s029.g0097.t1
Lsat_s029.g0098.t1SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
Lsat_s029.g0099.t1PROTEIN PBDC1
Lsat_s029.g0100.t1KINESIN-RELATED
Lsat_s029.g0101.t1TETRASPANIN
Lsat_s029.g0102.t1TETRASPANIN
Lsat_s029.g0103.t1CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED
Lsat_s029.g0104.t160S RIBOSOMAL PROTEIN L23A
Lsat_s029.g0105.t1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Lsat_s029.g0106.t1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Lsat_s029.g0107.t1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Lsat_s029.g0108.t1-
Lsat_s029.g0109.t1
Lsat_s029.g0110.t1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Lsat_s029.g0111.t1
Lsat_s029.g0112.t1
Lsat_s029.g0113.t1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Lsat_s029.g0114.t1
Lsat_s029.g0115.t1
Lsat_s029.g0116.t1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Lsat_s029.g0117.t1HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
Lsat_s029.g0118.t1
Lsat_s029.g0119.t1
Lsat_s029.g0120.t1
Lsat_s029.g0121.t1
Lsat_s029.g0122.t1
Lsat_s029.g0123.t1HEPARANASE
Lsat_s029.g0124.t1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Lsat_s029.g0125.t1UROPORPHYRINOGEN III SYNTHASE
Lsat_s029.g0126.t1
Lsat_s029.g0127.t1MATRIX METALLOPROTEINASE
Lsat_s029.g0128.t1
Lsat_s029.g0129.t1
Lsat_s029.g0130.t1
Lsat_s029.g0131.t1
Lsat_s029.g0132.t1
Lsat_s029.g0133.t1
Lsat_s029.g0134.t1
Lsat_s029.g0135.t1
Lsat_s029.g0136.t1
Lsat_s029.g0137.t1ERYTHROID DIFFERENTIATION-RELATED FACTOR 1
Lsat_s029.g0138.t1PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN
Lsat_s029.g0139.t1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
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