Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s028.g0241.t1 | |
| Lsat_s028.g0242.t1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Lsat_s028.g0243.t1 | |
| Lsat_s028.g0244.t1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Lsat_s028.g0245.t1 | TRANSMEMBRANE PROTEIN |
| Lsat_s028.g0246.t1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Lsat_s028.g0247.t1 | UNCHARACTERIZED |
| Lsat_s028.g0248.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 73 |
| Lsat_s028.g0249.t1 | |
| Lsat_s028.g0250.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s028.g0251.t1 | |
| Lsat_s028.g0252.t1 | TOUCAN, ISOFORM A |
| Lsat_s028.g0253.t1 | |
| Lsat_s028.g0254.t1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
| Lsat_s028.g0255.t1 | PALMITOYLTRANSFERASE ZDHHC16 |
| Lsat_s028.g0256.t1 | BILIVERDIN REDUCTASE A |
| Lsat_s028.g0257.t1 | |
| Lsat_s028.g0258.t1 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| Lsat_s028.g0259.t1 | ZINC FINGER PROTEIN |
| Lsat_s028.g0260.t1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Lsat_s028.g0261.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Lsat_s028.g0262.t1 | AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B |
| Lsat_s028.g0263.t1 | |
| Lsat_s028.g0264.t1 | PROGESTERONE-INDUCED BLOCKING FACTOR 1 |
| Lsat_s028.g0265.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s028.g0266.t1 | |
| Lsat_s028.g0267.t1 | |
| Lsat_s028.g0268.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s028.g0269.t1 | |
| Lsat_s028.g0270.t1 | PROTEIN CBG10425 |
| Lsat_s028.g0271.t1 | PROTEIN CBG10425 |
| Lsat_s028.g0272.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s028.g0273.t1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| Lsat_s028.g0274.t1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED |
| Lsat_s028.g0275.t1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| Lsat_s028.g0276.t1 | VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21 |
| Lsat_s028.g0277.t1 | |
| Lsat_s028.g0278.t1 | BTB POZ DOMAIN CONTAINING 12 |
| Lsat_s028.g0279.t1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L30 |
| Lsat_s028.g0280.t1 | ENDONUCLEASE-RELATED |
| Lsat_s028.g0281.t1 | COLLAGEN ALPHA |
| Lsat_s028.g0282.t1 | |
| Lsat_s028.g0283.t1 | UNCHARACTERIZED |
| Lsat_s028.g0284.t1 | FI21293P1 |
| Lsat_s028.g0285.t1 | GLYCOSYL TRANSFERASE |
| Lsat_s028.g0286.t1 | REVERSE TRANSCRIPTASES |
| Lsat_s028.g0287.t1 | CBP/P300-RELATED |
| Lsat_s028.g0288.t1 | NUCLEOPORIN |
| Lsat_s028.g0289.t1 | L-ASPARAGINASE |
| Lsat_s028.g0290.t1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
