Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s030.g0023.t1 | ELONGATION FACTOR TS |
Lsat_s030.g0024.t1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
Lsat_s030.g0025.t1 | AGAP008228-PA |
Lsat_s030.g0026.t1 | OTU DOMAIN CONTAINING PROTEIN |
Lsat_s030.g0027.t1 | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER |
Lsat_s030.g0028.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
Lsat_s030.g0029.t1 | |
Lsat_s030.g0030.t1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
Lsat_s030.g0031.t1 | |
Lsat_s030.g0032.t1 | GUANYLYL CYCLASE |
Lsat_s030.g0033.t1 | N-ACETYLTRANSFERASE 10 |
Lsat_s030.g0034.t1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
Lsat_s030.g0035.t1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
Lsat_s030.g0036.t1 | |
Lsat_s030.g0037.t1 | SPORE COAT PROTEIN SP85 |
Lsat_s030.g0038.t1 | SPORE COAT PROTEIN SP85 |
Lsat_s030.g0039.t1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
Lsat_s030.g0040.t1 | |
Lsat_s030.g0041.t1 | |
Lsat_s030.g0042.t1 | N-ACETYLTRANSFERASE 10 |
Lsat_s030.g0043.t1 | |
Lsat_s030.g0044.t1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
Lsat_s030.g0045.t1 | GLUTAMATE 5-KINASE |
Lsat_s030.g0046.t1 | |
Lsat_s030.g0047.t1 | MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS |
Lsat_s030.g0048.t1 | |
Lsat_s030.g0049.t1 | DUAL SPECIFICITY PROTEIN KINASE |
Lsat_s030.g0050.t1 | |
Lsat_s030.g0051.t1 | |
Lsat_s030.g0052.t1 | |
Lsat_s030.g0053.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
Lsat_s030.g0054.t1 | |
Lsat_s030.g0055.t1 | E3 UBIQUITIN-PROTEIN LIGASE SIAH2 |
Lsat_s030.g0056.t1 | PROTEIN C11ORF74 |
Lsat_s030.g0057.t1 | MULTICOPPER OXIDASE-RELATED |
Lsat_s030.g0058.t1 | |
Lsat_s030.g0059.t1 | |
Lsat_s030.g0060.t1 | |
Lsat_s030.g0061.t1 | |
Lsat_s030.g0062.t1 | |
Lsat_s030.g0063.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Lsat_s030.g0064.t1 | - |
Lsat_s030.g0065.t1 | UNCHARACTERIZED |
Lsat_s030.g0066.t1 | |
Lsat_s030.g0067.t1 | |
Lsat_s030.g0068.t1 | |
Lsat_s030.g0069.t1 | |
Lsat_s030.g0070.t1 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED |
Lsat_s030.g0071.t1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
Lsat_s030.g0072.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |