About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_37521-1.8RUBY-EYE2-LIKE PROTEIN
Bpl_scaf_37521-1.9OS02G0168900 PROTEIN
Bpl_scaf_37521-2.35-HYDROXYTRYPTAMINE RECEPTOR
Bpl_scaf_37524-0.0
Bpl_scaf_37524-0.4
Bpl_scaf_37524-0.6
Bpl_scaf_37531-0.4SOLUTE CARRIER FAMILY 22 MEMBER
Bpl_scaf_37531-1.10EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT
Bpl_scaf_37531-1.18
Bpl_scaf_37531-1.23
Bpl_scaf_37531-1.25
Bpl_scaf_37531-2.13XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Bpl_scaf_37531-2.15UNCHARACTERIZED
Bpl_scaf_37612-0.8TRANSMEMBRANE PROTEIN 254
Bpl_scaf_37612-0.9FERM DOMAIN CONTAINING PROTEIN
Bpl_scaf_37614-0.3ALPHA-L-FUCOSIDASE
Bpl_scaf_37615-0.12
Bpl_scaf_37615-0.13
Bpl_scaf_37616-0.4NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1
Bpl_scaf_37616-0.5PEFLIN
Bpl_scaf_37616-1.2
Bpl_scaf_37616-1.7
Bpl_scaf_37616-2.13REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_37616-2.15TRANSPOSON
Bpl_scaf_37616-2.27RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_37616-2.28HEH2P
Bpl_scaf_37616-2.3
Bpl_scaf_37616-2.9RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Bpl_scaf_37616-4.2
Bpl_scaf_37616-5.4CELL CYCLE CONTROL PROTEIN CWF22-RELATED
Bpl_scaf_37616-5.5
Bpl_scaf_37616-5.7PROTEIN CBG23806
Bpl_scaf_37621-1.2
Bpl_scaf_37621-2.0FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER
Bpl_scaf_37621-3.0CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_37621-3.11
Bpl_scaf_37621-3.13
Bpl_scaf_37621-3.8
Bpl_scaf_37624-0.6CONTACTIN 5
Bpl_scaf_37626-0.1
Bpl_scaf_3763-0.0
Bpl_scaf_37632-0.10
Bpl_scaf_37632-0.5PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_37632-0.7
Bpl_scaf_37632-0.9
Bpl_scaf_37632-1.4CHITIN SYNTHASE
Bpl_scaf_37632-2.7CHITIN SYNTHASE
Bpl_scaf_37632-3.0MUCIN 4-RELATED
Bpl_scaf_37632-3.1
Bpl_scaf_37632-3.6ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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