Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_37700-9.26 | |
| Bpl_scaf_37700-9.27 | |
| Bpl_scaf_37719-0.3 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_37735-0.1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_37735-0.2 | |
| Bpl_scaf_37746-0.6 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_37774-0.1 | |
| Bpl_scaf_37794-0.0 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Bpl_scaf_37795-0.7 | |
| Bpl_scaf_37795-0.9 | |
| Bpl_scaf_37795-1.10 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_37795-1.17 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Bpl_scaf_37795-1.27 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_37795-1.6 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Bpl_scaf_37795-2.5 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
| Bpl_scaf_37795-3.4 | PROTEIN CBG04600 |
| Bpl_scaf_37795-3.5 | FTP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_37795-4.10 | PROTEIN STAR |
| Bpl_scaf_37802-0.6 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_3782-0.16 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| Bpl_scaf_3782-0.5 | SAP30 |
| Bpl_scaf_3782-0.6 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| Bpl_scaf_3782-1.5 | NFRKB-RELATED |
| Bpl_scaf_3782-1.7 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_3782-2.0 | COLLAGEN ALPHA |
| Bpl_scaf_3782-2.2 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_3782-2.3 | COLLAGEN ALPHA |
| Bpl_scaf_3782-2.6 | UNCHARACTERIZED |
| Bpl_scaf_3782-2.9 | COLLAGEN ALPHA |
| Bpl_scaf_3782-3.5 | VIRAL IAP-ASSOCIATED FACTOR HOMOLOG |
| Bpl_scaf_3782-4.18 | CALCYPHOSIN |
| Bpl_scaf_3782-4.19 | SMALL NUCLEAR RIBONUCLEOPROTEIN E |
| Bpl_scaf_3782-4.23 | UNCHARACTERIZED |
| Bpl_scaf_3782-4.4 | UNCHARACTERIZED |
| Bpl_scaf_37821-0.2 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_37823-0.9 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_37831-0.8 | |
| Bpl_scaf_37840-0.4 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_37880-0.16 | PROTEIN CBG23764 |
| Bpl_scaf_37880-0.3 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_37887-0.13 | AGAP008170-PA |
| Bpl_scaf_37887-0.14 | AGAP008170-PA |
| Bpl_scaf_37887-0.15 | PROTEIN PSIB-RELATED-RELATED |
| Bpl_scaf_37887-0.16 | |
| Bpl_scaf_3789-0.4 | |
| Bpl_scaf_3789-0.5 | |
| Bpl_scaf_37912-0.11 | B-CELL ANTIGEN RECEPTOR COMPLEX-ASSOCIATED PROTEIN |
| Bpl_scaf_37912-0.7 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_37921-0.0 | |
| Bpl_scaf_37921-0.10 | TYROSINE-PROTEIN KINASE |
