Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_36709-0.1 | |
| Bpl_scaf_36709-0.10 | |
| Bpl_scaf_36709-0.25 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_36709-0.3 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_36709-0.4 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_36709-1.29 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_36709-1.6 | INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 |
| Bpl_scaf_36709-2.11 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_36709-2.14 | ROLLING PEBBLES, ISOFORM B |
| Bpl_scaf_36709-2.15 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| Bpl_scaf_36709-2.2 | |
| Bpl_scaf_36709-2.3 | |
| Bpl_scaf_36709-2.7 | |
| Bpl_scaf_36709-2.8 | |
| Bpl_scaf_3671-0.8 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_3671-0.9 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_36710-0.2 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3673-0.5 | PROTEIN SIDEKICK |
| Bpl_scaf_3673-0.6 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_36730-0.1 | PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P |
| Bpl_scaf_36731-0.1 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_36733-0.2 | |
| Bpl_scaf_36734-0.0 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_36735-0.4 | DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1 |
| Bpl_scaf_36735-1.7 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_36735-1.8 | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED |
| Bpl_scaf_36735-2.18 | |
| Bpl_scaf_3674-0.0 | |
| Bpl_scaf_3678-0.2 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| Bpl_scaf_3679-0.1 | |
| Bpl_scaf_3680-1.3 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 |
| Bpl_scaf_3680-2.4 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| Bpl_scaf_3680-3.11 | ALPHA-1,4 POLYGALACTOSAMINIDASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G07890)-RELATED |
| Bpl_scaf_3680-3.33 | SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED |
| Bpl_scaf_3680-3.36 | AQUAPORIN TRANSPORTER |
| Bpl_scaf_3680-4.3 | GUANYLYL CYCLASE |
| Bpl_scaf_36949-0.4 | OXIDASE/PEROXIDASE |
| Bpl_scaf_36950-0.4 | AGAP001331-PA-RELATED |
| Bpl_scaf_36950-0.5 | |
| Bpl_scaf_36951-0.0 | |
| Bpl_scaf_36951-0.10 | |
| Bpl_scaf_36951-0.13 | |
| Bpl_scaf_36951-0.4 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_36951-0.7 | |
| Bpl_scaf_36952-0.7 | ORIGIN RECOGNITION COMPLEX SUBUNIT 6 |
| Bpl_scaf_36952-0.8 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Bpl_scaf_36953-0.10 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_36953-0.11 | TETRATRICOPEPTIDE REPEAT PROTEIN 13 |
| Bpl_scaf_36953-0.23 | BETA-1,4-GLUCURONYLTRANSFERASE 1 |
| Bpl_scaf_36953-0.26 | MYOSIN LIGHT CHAIN 1, 3 |
