Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_36449-2.0 | |
| Bpl_scaf_36449-2.10 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED |
| Bpl_scaf_36449-2.13 | |
| Bpl_scaf_36449-2.14 | |
| Bpl_scaf_36449-3.6 | |
| Bpl_scaf_36449-3.7 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_36449-4.5 | ZINC FINGER PROTEIN 142 |
| Bpl_scaf_36449-4.7 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| Bpl_scaf_36449-5.11 | CYSTEINE PROTEASE ATG4 |
| Bpl_scaf_36449-5.12 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
| Bpl_scaf_36449-5.3 | |
| Bpl_scaf_36449-5.5 | BECLIN 1 |
| Bpl_scaf_36459-0.6 | |
| Bpl_scaf_3646-0.1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_36470-0.0 | |
| Bpl_scaf_36470-0.7 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_36470-0.9 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_36496-0.9 | |
| Bpl_scaf_36509-0.36 | |
| Bpl_scaf_36509-0.37 | |
| Bpl_scaf_36509-0.8 | |
| Bpl_scaf_36530-0.10 | |
| Bpl_scaf_36530-0.7 | |
| Bpl_scaf_3654-0.16 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_3654-0.18 | |
| Bpl_scaf_3654-0.19 | |
| Bpl_scaf_3654-1.4 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Bpl_scaf_3654-1.5 | ACROSIN-RELATED |
| Bpl_scaf_3654-2.13 | ARMADILLO-TYPE FOLD-RELATED |
| Bpl_scaf_3654-2.15 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| Bpl_scaf_3654-2.22 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_3654-3.13 | ARMADILLO-TYPE FOLD-RELATED |
| Bpl_scaf_3654-3.39 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| Bpl_scaf_3654-3.9 | ZINC FINGER PROTEIN |
| Bpl_scaf_36542-0.0 | |
| Bpl_scaf_36542-0.11 | |
| Bpl_scaf_36542-0.16 | |
| Bpl_scaf_36542-0.9 | CONTACTIN 5 |
| Bpl_scaf_36555-0.11 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_36555-0.12 | |
| Bpl_scaf_36565-0.13 | GLUTAMINASE |
| Bpl_scaf_36565-0.14 | |
| Bpl_scaf_36565-0.15 | |
| Bpl_scaf_36574-0.33 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_36574-0.6 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_36574-0.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_36574-0.9 | INVERTED FORMIN-2 |
| Bpl_scaf_3658-0.4 | SEPIAPTERIN REDUCTASE |
| Bpl_scaf_3658-0.6 | BETA-GALACTOSIDASE RELATED |
| Bpl_scaf_3658-1.5 |
