Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_3658-2.0 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
| Bpl_scaf_3658-3.17 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
| Bpl_scaf_3658-3.19 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
| Bpl_scaf_3658-3.20 | |
| Bpl_scaf_3658-3.6 | VERTNIN |
| Bpl_scaf_36584-0.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_36585-0.5 | |
| Bpl_scaf_36585-0.8 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C |
| Bpl_scaf_36585-0.9 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_36585-1.12 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_36585-1.13 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
| Bpl_scaf_36585-2.3 | RING BOX |
| Bpl_scaf_36585-3.11 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_36585-3.8 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_36585-3.9 | |
| Bpl_scaf_36585-4.12 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_36585-4.6 | - |
| Bpl_scaf_36585-5.13 | NUCLEAR TRANSPORT FACTOR 2 |
| Bpl_scaf_36585-5.4 | UBIQUITIN-PROTEIN LIGASE E3C |
| Bpl_scaf_36585-6.3 | STROMAL INTERACTION MOLECULE HOMOLOG |
| Bpl_scaf_36585-6.5 | MALATE SYNTHASE |
| Bpl_scaf_36585-7.0 | |
| Bpl_scaf_36585-7.8 | |
| Bpl_scaf_3659-0.2 | |
| Bpl_scaf_36594-0.8 | |
| Bpl_scaf_36594-0.9 | |
| Bpl_scaf_36595-1.6 | SPHINGOSINE KINASE |
| Bpl_scaf_36595-2.11 | SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED |
| Bpl_scaf_36595-2.13 | |
| Bpl_scaf_36595-2.15 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| Bpl_scaf_36595-2.9 | UNCHARACTERIZED |
| Bpl_scaf_36595-3.4 | |
| Bpl_scaf_36595-3.8 | DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41 |
| Bpl_scaf_36595-3.9 | |
| Bpl_scaf_36595-4.36 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_36595-4.37 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Bpl_scaf_36595-4.4 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_36595-5.0 | |
| Bpl_scaf_36595-6.54 | ACTIN |
| Bpl_scaf_36595-6.55 | ACTIN |
| Bpl_scaf_36595-6.56 | |
| Bpl_scaf_36595-6.57 | ACTIN |
| Bpl_scaf_36595-6.6 | |
| Bpl_scaf_36595-7.3 | ACTIN |
| Bpl_scaf_36595-7.54 | ACTIN |
| Bpl_scaf_36595-7.55 | ACTIN |
| Bpl_scaf_36595-7.56 | METAL TRANSPORTER CNNM |
| Bpl_scaf_36616-0.6 | OSJNBA0004B13.7 PROTEIN |
| Bpl_scaf_36623-0.2 | |
| Bpl_scaf_36629-0.4 | SIALATE O-ACETYLESTERASE |
