Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_36046-2.17 | |
| Bpl_scaf_36046-2.6 | PROTEIN STAR |
| Bpl_scaf_36046-2.8 | |
| Bpl_scaf_36051-0.1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_36057-0.0 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_36076-0.2 | OXIDASE/PEROXIDASE |
| Bpl_scaf_36076-1.0 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_36076-1.7 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_36076-2.11 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_36076-2.14 | ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER |
| Bpl_scaf_36076-2.16 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_36076-2.17 | SOLUTE CARRIER FAMILY 5 |
| Bpl_scaf_36076-2.40 | |
| Bpl_scaf_36076-2.44 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_36076-2.46 | |
| Bpl_scaf_36076-2.7 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_36085-1.9 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
| Bpl_scaf_36085-2.16 | SECY/SEC61-ALPHA FAMILY MEMBER |
| Bpl_scaf_36085-2.17 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Bpl_scaf_36085-2.18 | SYNAPTOTAGMIN |
| Bpl_scaf_36085-2.19 | SAM (S-ADENOSYL METHIONINE) TRANSPORTER |
| Bpl_scaf_36085-2.21 | RUVB-RELATED REPTIN AND PONTIN |
| Bpl_scaf_36085-2.41 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| Bpl_scaf_36085-2.46 | DYNAMIN |
| Bpl_scaf_36154-0.2 | HELICASE WITH DEATH DOMAIN-RELATED |
| Bpl_scaf_36155-0.2 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_36155-0.3 | |
| Bpl_scaf_36157-0.1 | VILLIN |
| Bpl_scaf_36158-0.0 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Bpl_scaf_36158-0.1 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_36158-1.0 | |
| Bpl_scaf_36158-1.14 | NADPH OXIDASE |
| Bpl_scaf_36158-1.15 | MIDKINE AND PLEIOTROPHIN 1, ISOFORM A-RELATED |
| Bpl_scaf_36158-1.28 | MIDKINE AND PLEIOTROPHIN 1, ISOFORM A-RELATED |
| Bpl_scaf_36158-1.29 | FLAVIN MONOAMINE OXIDASE |
| Bpl_scaf_36159-0.1 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
| Bpl_scaf_36159-1.0 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
| Bpl_scaf_36159-10.10 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_36159-10.15 | INOSITOL MONOPHOSPHATASE |
| Bpl_scaf_36159-10.16 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
| Bpl_scaf_36159-10.24 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| Bpl_scaf_36159-10.6 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_36159-10.9 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_36159-2.0 | |
| Bpl_scaf_36159-3.19 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Bpl_scaf_36159-3.20 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Bpl_scaf_36159-3.21 | |
| Bpl_scaf_36159-4.6 | GLYCOPROTEIN HORMONE RECEPTOR |
| Bpl_scaf_36159-5.5 | AMINO ACID TRANSPORTER |
| Bpl_scaf_36159-5.7 |
