About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_35564-0.4
Bpl_scaf_35572-0.4APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_35591-0.3
Bpl_scaf_35591-1.0
Bpl_scaf_35591-1.5ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_35591-2.5
Bpl_scaf_35591-4.6POTE ANKYRIN DOMAIN
Bpl_scaf_35591-4.7REVERSE TRANSCRIPTASES
Bpl_scaf_35596-0.2
Bpl_scaf_35623-0.11
Bpl_scaf_35623-0.6OS10G0105400 PROTEIN
Bpl_scaf_35633-0.10
Bpl_scaf_35633-0.8
Bpl_scaf_35633-0.9
Bpl_scaf_35634-0.11
Bpl_scaf_35634-0.9
Bpl_scaf_35634-1.1INNEXIN
Bpl_scaf_35634-4.11METALLOPHOSPHOESTERASE
Bpl_scaf_35634-4.15C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_35634-4.9
Bpl_scaf_35643-0.1GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_35655-0.0
Bpl_scaf_35655-0.11
Bpl_scaf_35655-0.12
Bpl_scaf_35655-0.7
Bpl_scaf_35683-0.1
Bpl_scaf_35698-0.7
Bpl_scaf_35698-0.8
Bpl_scaf_35715-0.1
Bpl_scaf_35717-0.0
Bpl_scaf_35726-0.8
Bpl_scaf_35727-1.14COILED-COIL DOMAIN-CONTAINING PROTEIN 30
Bpl_scaf_35727-1.17RETICULOCALBIN
Bpl_scaf_35727-2.7
Bpl_scaf_35727-2.8
Bpl_scaf_35727-4.15BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
Bpl_scaf_35727-4.8CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
Bpl_scaf_35727-4.9BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
Bpl_scaf_35727-5.5BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
Bpl_scaf_35732-0.4
Bpl_scaf_35747-0.2
Bpl_scaf_35747-0.4GUANYLYL CYCLASE
Bpl_scaf_35755-0.21
Bpl_scaf_35755-0.22
Bpl_scaf_35755-0.25
Bpl_scaf_35755-0.3
Bpl_scaf_35773-0.0
Bpl_scaf_35773-0.1
Bpl_scaf_35773-0.10
Bpl_scaf_35773-0.2
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