About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_35205-0.14PHD FINGER PROTEINS
Bpl_scaf_35205-0.16STEROL DESATURASE-RELATED PROTEIN
Bpl_scaf_35205-0.17EPITHELIAL MEMBRANE PROTEIN-RELATED
Bpl_scaf_35205-0.18
Bpl_scaf_35205-0.24NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1
Bpl_scaf_35205-0.5
Bpl_scaf_35206-1.0
Bpl_scaf_35206-1.5
Bpl_scaf_35206-2.0
Bpl_scaf_35206-2.11N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE
Bpl_scaf_35206-2.15
Bpl_scaf_35206-2.31CEREBELLIN-RELATED
Bpl_scaf_35206-2.32
Bpl_scaf_35206-2.34
Bpl_scaf_35206-2.36CEREBELLIN-RELATED
Bpl_scaf_35206-2.4
Bpl_scaf_35206-3.15CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_35206-3.8N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE
Bpl_scaf_35206-3.9CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN
Bpl_scaf_35206-5.14COMM DOMAIN CONTAINING PROTEIN 5
Bpl_scaf_35206-5.16
Bpl_scaf_35206-5.17
Bpl_scaf_35206-5.19
Bpl_scaf_35206-5.6
Bpl_scaf_35206-6.11ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Bpl_scaf_35206-6.28RING FINGER PROTEIN 127
Bpl_scaf_35206-6.29METHYLMALONYL-COA MUTASE
Bpl_scaf_35206-6.7RAB FAMILY
Bpl_scaf_35206-7.1SARCOGLYCAN
Bpl_scaf_35206-7.10
Bpl_scaf_35206-7.12DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED
Bpl_scaf_35206-7.2BONUS, ISOFORM C-RELATED
Bpl_scaf_35206-7.20SARCOGLYCAN
Bpl_scaf_35207-0.4
Bpl_scaf_35207-0.7
Bpl_scaf_35207-1.6AGAP001705-PA
Bpl_scaf_35207-1.8TMEM26 PROTEIN
Bpl_scaf_35207-1.9
Bpl_scaf_35208-0.4COATOMER SUBUNIT DELTA
Bpl_scaf_35208-5.0
Bpl_scaf_35208-6.0
Bpl_scaf_35208-6.2
Bpl_scaf_35208-6.20
Bpl_scaf_35208-7.0
Bpl_scaf_35208-7.1
Bpl_scaf_35208-7.11SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Bpl_scaf_35208-7.16PROTEIN STAR
Bpl_scaf_35208-7.19ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_35208-7.20ALPHA- 1,3 -FUCOSYLTRANSFERASE
Bpl_scaf_35208-7.24
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