About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_35497-1.4
Bpl_scaf_35497-1.7PRENYLATED RAB ACCEPTOR 1-RELATED
Bpl_scaf_35497-11.2NEPHRIN
Bpl_scaf_35497-2.7PROTEIN SIDEKICK
Bpl_scaf_35497-2.8
Bpl_scaf_35497-4.7CEREBELLIN-RELATED
Bpl_scaf_35497-4.8OTU DOMAIN CONTAINING PROTEIN
Bpl_scaf_35497-5.16POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
Bpl_scaf_35497-5.18
Bpl_scaf_35497-6.10
Bpl_scaf_35497-6.11OTU DOMAIN CONTAINING PROTEIN
Bpl_scaf_35497-7.14HIGH-AFFINITY CHOLINE TRANSPORTER 1
Bpl_scaf_35497-7.17OTU DOMAIN CONTAINING PROTEIN
Bpl_scaf_35497-7.23
Bpl_scaf_35497-7.24CELL FATE DETERMINING PROTEIN MAB21-RELATED
Bpl_scaf_35497-8.11NEPHRIN
Bpl_scaf_35497-8.12SUGAR KINASE
Bpl_scaf_35497-8.15NF-KAPPA-B INHIBITOR ALPHA
Bpl_scaf_35498-0.2
Bpl_scaf_35503-0.3RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_35504-0.5CYTOKINE RECEPTOR
Bpl_scaf_35506-0.6XANTHINE DEHYDROGENASE
Bpl_scaf_35506-0.7SOLUTE CARRIER FAMILY 39
Bpl_scaf_35506-0.8
Bpl_scaf_35506-1.3SI:DKEY-256H2.1
Bpl_scaf_35506-1.7
Bpl_scaf_35506-3.0
Bpl_scaf_35506-3.11SIDESTEP PROTEIN
Bpl_scaf_35506-3.15HELIX LOOP HELIX PROTEIN 21-RELATED
Bpl_scaf_35506-3.18
Bpl_scaf_35506-3.27DNAJ HOMOLOG SUBFAMILY C MEMBER 9
Bpl_scaf_35506-3.28HELIX LOOP HELIX PROTEIN 21-RELATED
Bpl_scaf_35506-3.29
Bpl_scaf_35509-0.4
Bpl_scaf_35513-0.4
Bpl_scaf_35514-0.3
Bpl_scaf_35517-0.7ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
Bpl_scaf_35517-1.10ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
Bpl_scaf_35517-3.11
Bpl_scaf_35517-3.13AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
Bpl_scaf_35517-3.6
Bpl_scaf_35517-3.8MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_3552-0.3
Bpl_scaf_3553-0.2VASCULAR CELL ADHESION MOLECULE 1
Bpl_scaf_35557-0.0
Bpl_scaf_3556-0.2
Bpl_scaf_3556-2.0
Bpl_scaf_3556-2.3
Bpl_scaf_3556-2.6
Bpl_scaf_35564-0.2
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