About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60246-
Paelopatides60247TRANSPOSON
Paelopatides60248RETROTRANSPOSON
Paelopatides60249RETROTRANSPOSON
Paelopatides60250-
Paelopatides60251BUCENTAUR RELATED
Paelopatides60252-
Paelopatides60253BUCENTAUR RELATED
Paelopatides60254REVERSE TRANSCRIPTASES
Paelopatides60256-
Paelopatides60257-
Paelopatides60258PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60259UROPORPHYRINOGEN III SYNTHASE
Paelopatides60260UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED
Paelopatides60261NF-KAPPA-B ESSENTIAL MODULATOR
Paelopatides60262UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED
Paelopatides60263PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60264-
Paelopatides60265INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides60266-
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