About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60309POL PROTEIN
Paelopatides60310POL PROTEIN
Paelopatides60311-
Paelopatides603125-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides60313MUCIN-22
Paelopatides60314-
Paelopatides60315-
Paelopatides60316-
Paelopatides60317MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides60318NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides60319B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides60320-
Paelopatides60321VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
Paelopatides60322VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
Paelopatides60323-
Paelopatides60324-
Paelopatides60325CDNA SEQUENCE BC048562
Paelopatides60326UNCHARACTERIZED
Paelopatides60327FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60328-
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