About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60287POL PROTEIN
Paelopatides60288HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides60289REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60292-
Paelopatides60293-
Paelopatides60294-
Paelopatides60295-
Paelopatides60296PROTEIN CBG26694
Paelopatides60297ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides60298-
Paelopatides60299CRUMBS FAMILY MEMBER
Paelopatides60300(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
Paelopatides60301-
Paelopatides60302-
Paelopatides60303GAG-RELATED PROTEIN
Paelopatides60304F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides60305PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides60306PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60307-
Paelopatides60308PROTEIN CBG26694
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