Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s026.g0217.t1 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
| Lsat_s026.g0218.t1 | ZINC FINGER PROTEIN |
| Lsat_s026.g0219.t1 | |
| Lsat_s026.g0220.t1 | |
| Lsat_s026.g0221.t1 | |
| Lsat_s026.g0222.t1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| Lsat_s026.g0223.t1 | UNCHARACTERIZED |
| Lsat_s026.g0224.t1 | UNCHARACTERIZED |
| Lsat_s026.g0225.t1 | |
| Lsat_s026.g0226.t1 | PROTEIN SIDEKICK |
| Lsat_s026.g0227.t1 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
| Lsat_s026.g0228.t1 | COPROPORPHYRINIGEN III OXIDASE |
| Lsat_s026.g0229.t1 | COLLAGEN |
| Lsat_s026.g0230.t1 | RETINOBLASTOMA-BINDING PROTEIN 6 |
| Lsat_s026.g0231.t1 | DNA2/NAM7 HELICASE FAMILY |
| Lsat_s026.g0232.t1 | |
| Lsat_s026.g0233.t1 | PROTEIN SIDEKICK |
| Lsat_s026.g0234.t1 | |
| Lsat_s026.g0235.t1 | GUANYLYL CYCLASE |
| Lsat_s026.g0236.t1 | |
| Lsat_s026.g0237.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT |
| Lsat_s026.g0238.t1 | |
| Lsat_s026.g0239.t1 | |
| Lsat_s026.g0240.t1 | |
| Lsat_s026.g0241.t1 | |
| Lsat_s026.g0242.t1 | |
| Lsat_s026.g0243.t1 | RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED |
| Lsat_s026.g0244.t1 | UNCHARACTERIZED |
| Lsat_s026.g0245.t1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
| Lsat_s026.g0246.t1 | ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN |
| Lsat_s026.g0247.t1 | |
| Lsat_s026.g0248.t1 | N-ACETYLTRANSFERASE 9 |
| Lsat_s026.g0249.t1 | |
| Lsat_s026.g0250.t1 | |
| Lsat_s026.g0251.t1 | CUBILIN-LIKE PROTEIN |
| Lsat_s026.g0252.t1 | |
| Lsat_s026.g0253.t1 | CRUMBS FAMILY MEMBER |
| Lsat_s026.g0254.t1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Lsat_s026.g0255.t1 | ENZYMATIC POLYPROTEIN-RELATED |
| Lsat_s026.g0256.t1 | DYNEIN INTERMEDIATE CHAIN |
| Lsat_s026.g0257.t1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| Lsat_s026.g0258.t1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN |
| Lsat_s026.g0259.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Lsat_s026.g0260.t1 | TRANSMEMBRANE CHANNEL-RELATED |
| Lsat_s026.g0261.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Lsat_s026.g0262.t1 | TRANSMEMBRANE CHANNEL-RELATED |
| Lsat_s026.g0263.t1 | PUTATIVE-RELATED |
| Lsat_s026.g0264.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Lsat_s026.g0265.t1 | UNCHARACTERIZED |
| Lsat_s026.g0266.t1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
