About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57110METHANETHIOL OXIDASE
Paelopatides57111REVERSE TRANSCRIPTASES
Paelopatides57112CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57113PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
Paelopatides57114ZINC FINGER PROTEIN
Paelopatides57115RIBOSOMAL PROTEIN S6 KINASE
Paelopatides57116SERINE/THREONINE-PROTEIN KINASE
Paelopatides57117-
Paelopatides57118DEFECTIVE SPERMATOGENESIS PROTEIN 39
Paelopatides57119F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
Paelopatides57120EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides57122EXS-RELATED PROTEIN
Paelopatides57123-
Paelopatides57124CROSSVEINLESS 2
Paelopatides57125-
Paelopatides57126ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides57127REVERSE TRANSCRIPTASES
Paelopatides57128MYOSIN
Paelopatides57129PROTEIN CBG26694
Paelopatides57130MYOSIN
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