About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57026PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides57027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57028NF-KAPPA-B INHIBITOR ALPHA
Paelopatides57029-
Paelopatides57030-
Paelopatides57031THO COMPLEX SUBUNIT 1
Paelopatides57032PROTEIN EVA-1
Paelopatides57033SIALIDASE
Paelopatides57034SIALIDASE
Paelopatides57035RETINOL-BINDING PROTEIN 4
Paelopatides57036-
Paelopatides57037MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides57038DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides57039ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides57040CASPASE
Paelopatides57041HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides57042PROTEIN CBG26694
Paelopatides57043-
Paelopatides57044POL PROTEIN
Paelopatides57045ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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