About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55438PROTEIN CBG26694
Paelopatides55439PROTEIN CBG26694
Paelopatides55440-
Paelopatides55441-
Paelopatides55442-
Paelopatides55443-
Paelopatides55445-
Paelopatides55446-
Paelopatides55447CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Paelopatides55448DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides55449REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55450-
Paelopatides55451SERINE/THREONINE-PROTEIN KINASE
Paelopatides55452-
Paelopatides55453-
Paelopatides55454EYES ABSENT
Paelopatides55455RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED
Paelopatides5545640S RIBOSOMAL PROTEIN S12
Paelopatides55457ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides55458-
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