About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55459CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55460DEATH DOMAIN-CONTAINING PROTEIN
Paelopatides55461-
Paelopatides55462ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL
Paelopatides55463PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55464REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55465SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55466ENOLASE
Paelopatides55467BESTROPHIN
Paelopatides55468BESTROPHIN
Paelopatides55469PROTEIN CBG26694
Paelopatides55470NOP SEVEN ASSOCIATED PROTEIN 1
Paelopatides55471NOP SEVEN ASSOCIATED PROTEIN 1
Paelopatides55472-
Paelopatides55473PROTEIN CBG26694
Paelopatides55474-
Paelopatides55475ENDONUCLEASE-RELATED
Paelopatides55478CRUMBS FAMILY MEMBER
Paelopatides55479CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
Paelopatides55480REVERSE TRANSCRIPTASES
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