About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50625HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50626NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides50627-
Paelopatides50630FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides5063152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides50632FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides50633FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides50634MARGINAL ZONE B- AND B1-CELL-SPECIFIC PROTEIN
Paelopatides50635UNCHARACTERIZED
Paelopatides50636NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides50637REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50638-
Paelopatides50639ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides506405-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides50641-
Paelopatides50642DEOXYRIBONUCLEASE II
Paelopatides50643ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50644PROTEIN CBG26694
Paelopatides50645-
Paelopatides50646TRANSPOSABLE ELEMENT-RELATED
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