About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50565COILED-COIL DOMAIN-CONTAINING PROTEIN 84
Paelopatides50566COILED-COIL DOMAIN-CONTAINING PROTEIN 84
Paelopatides5056740S RIBOSOMAL PROTEIN S21
Paelopatides50568AGAP005440-PA
Paelopatides50569-
Paelopatides5057040S RIBOSOMAL PROTEIN S21
Paelopatides50571-
Paelopatides50572FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides50573-
Paelopatides50574AMINE OXIDASE
Paelopatides50575-
Paelopatides50576REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Paelopatides50577HISTONE H2A
Paelopatides50578HISTONE H3
Paelopatides50579HISTONE H4
Paelopatides50580HISTONE H2B
Paelopatides50581HISTONE H2A
Paelopatides50582HISTONE H3
Paelopatides50583HISTONE H4
Paelopatides50584HISTONE H2B
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