About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50667-
Paelopatides50668HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides50669HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides50670-
Paelopatides50671-
Paelopatides50672ZGC:101858
Paelopatides50673PROTEIN CBG26694
Paelopatides50674PROTEIN CBG26694
Paelopatides50675-
Paelopatides50676NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides5067752 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides50678REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50679PROTEIN CBG26694
Paelopatides50680ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides50681ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides50682ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides50683NG5
Paelopatides50684-
Paelopatides50685MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides50686DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED
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