About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47044DDB1- AND CUL4-ASSOCIATED FACTOR 17
Paelopatides47046NETRIN RECEPTOR UNC5
Paelopatides47047-
Paelopatides47048RETROTRANSPOSON
Paelopatides47049RETROTRANSPOSON
Paelopatides47050RETROTRANSPOSON
Paelopatides47051-
Paelopatides47052-
Paelopatides47053DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides47054DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides47055GRB2-ASSOCIATED-BINDING PROTEIN
Paelopatides47056G-PROTEIN COUPLED RECEPTOR
Paelopatides47057SOLUTE CARRIER FAMILY 13 MEMBER
Paelopatides47058CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47059CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47060CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47061F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides47062-
Paelopatides47063-
Paelopatides47064CXC DOMAIN-CONTAINING PROTEIN-RELATED
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