About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47024REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47025-
Paelopatides47026ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides47027AP ENDONUCLEASE
Paelopatides47028SMALL VCP/P97-INTERACTING PROTEIN
Paelopatides47029BUCENTAUR RELATED
Paelopatides47030ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides47031ADENYLYL CYCLASE-ASSOCIATED PROTEIN
Paelopatides47032AAA DOMAIN-CONTAINING
Paelopatides47033AAA DOMAIN-CONTAINING
Paelopatides47034-
Paelopatides470356-PHOSPHOGLUCONATE DEHYDROGENASE
Paelopatides47036-
Paelopatides47037-
Paelopatides47038ACTIN-BINDING LIM PROTEIN
Paelopatides47039PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides47040NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides47041ASHWIN
Paelopatides47042-
Paelopatides47043E3 UBIQUITIN-PROTEIN LIGASE MIB2
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