About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47004-
Paelopatides47005CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL
Paelopatides47006-
Paelopatides47007D-TYROSYL-TRNA TYR DEACYLASE
Paelopatides47008INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides47009PROTEIN CBG26694
Paelopatides47010-
Paelopatides47011-
Paelopatides47012ENDONUCLEASE-RELATED
Paelopatides47013PUTATIVE-RELATED
Paelopatides47014-
Paelopatides47015PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides47016RETROTRANSPOSON
Paelopatides47017RETROTRANSPOSON
Paelopatides47018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47019SOLUTE CARRIER FAMILY 25
Paelopatides47020REVERSE TRANSCRIPTASE
Paelopatides47021TRANSPOSASE, PUTATIVE-RELATED
Paelopatides47022SD08549P
Paelopatides47023-
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